The Galaxy team's new paper is now available online, featuring new tools and a pipeline for analyzing metagenomic datasets. In addition to showing off the tools and workflow system, this paper includes the first use of the new Galaxy page system to publish an online supplement that fully documents every detail of the analysis and allows direct access to all of the data and methods used. This work has been featured in wired news, genomeweb, and the Chronicle.

EDIT: More at Emory eScienceCommons